NGS for natural scientist

1. Preface
2. Getting started
3. Good-to-know beforehand
4. Setting up terminal
5. FASTQ and quality control
- Getting FASTQ files from online database
- FASTQ quality assessment
6. Mapping/alignment and quantification
- Salmon
- DESeq2
7. Visualization
8. Single cell RNA-Seq
9. AWS cloud and Machine Learning
(pending material)
- graphPad
- readings for ML

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readings for ML

PreviousgraphPad

Last updated 1 year ago

https://docs.aws.amazon.com/sagemaker/latest/dg/gs-console.html

https://huggingface.co/docs/datasets/v2.13.0/en/index

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